Clade genomics of Vertebrates.
We have developed a pipeline for clade analysis. Orthologs are predicted between all pairs of genomes using
Leo Goodstadt's PhyOP
. Pairwise orthology
predictions are then clustered and multiple alignments are built for each cluster using
Robert Edgar's MUSCLE
. Phylogenetic trees are estimated using
Heng Li's TreeBeST
The result of this pipeline, clusters, trees and multiple alignments, can be accessed via these
The following species have been included in this analysis:
Quick search for a gene or orthologous group.
Go to the query
page for more elaborate searches.
We have several lists of orthologous groups available:
For a full list, please go to the statistics
This is version optic_cpicta3_4, released on