Clade genomics of Vertebrates.
We have developed a pipeline for clade analysis. Orthologs are predicted between all pairs of genomes using
Leo Goodstadt's
PhyOP. Pairwise orthology
predictions are then clustered and multiple alignments are built for each cluster using
Robert Edgar's
MUSCLE. Phylogenetic trees are estimated using
Heng Li's
TreeBeST.
The result of this pipeline, clusters, trees and multiple alignments, can be accessed via these
pages.
Species
The following species have been included in this analysis:
| Species |
Full Name |
| H. sapiens |
Homo sapiens |
| M. musculus |
Mus musculus |
| G. gallus |
Gallus gallus |
| M. gallopavo |
Meleagris gallopavo |
| T. guttata |
Taeniopygia guttata |
| G.magnirostris |
Geospiza magnirostris |
| A. carolinensis |
Anolis carolinensis |
| T. nigroviridis |
Tetraodon nigroviridis |
Quick search
Quick search for a gene or orthologous group.
Go to the
query
page for more elaborate searches.
Browse
We have several lists of orthologous groups available:
For a full list, please go to the
statistics pages.
Version
This is version vv_v16, released on
unknown.
