Clade genomics of Nematodes.

We have developed a pipeline for clade analysis. Orthologs are predicted between all pairs of genomes using Leo Goodstadt's PhyOP. Pairwise orthology predictions are then clustered and multiple alignments are built for each cluster using Robert Edgar's MUSCLE. Phylogenetic trees are estimated using Heng Li's TreeBeST.
 
The result of this pipeline, clusters, trees and multiple alignments, can be accessed via these pages.

Species

The following species have been included in this analysis:
Species Full Name
C. elegans Caenorhabditis elegans
C. remanei Caenorhabditis remanei
C. brenneri Caenorhabditis brenneri
C. briggsae Caenorhabditis briggsae

Quick search

Quick search for a gene or orthologous group.
Gene
Group
 
Go to the query page for more elaborate searches.

Browse

We have several lists of orthologous groups available:
simple ortholog sets list of 1:1 orthologs for 2..n species
ortholog groups list of orthologous groups
For a full list, please go to the statistics pages.

Version

This is version ww_v1, released on 1.7.2007.